Mass Spectrometry from Very Basics



🌟 Mass Spectrometry from Very Basics

What is Mass Spectrometry?

Mass spectrometry (MS) is an analytical technique used to measure the mass-to-charge ratio (m/z) of molecules. It helps identify the chemical composition, structure, and quantity of compounds in a sample.


🎯 Why is Mass Spectrometry Important?

  • Identifies unknown compounds
  • Determines molecular weights
  • Detects trace levels of substances
  • Analyzes complex mixtures
  • Studies structure and fragmentation of molecules

🔬 Basic Principle of Mass Spectrometry

Mass spectrometry involves three main steps:

  1. Ionization – Sample molecules are converted into ions.
  2. Separation – Ions are separated based on their mass-to-charge (m/z) ratio.
  3. Detection – The detector measures the ions and creates a mass spectrum.

🧪 Components of a Mass Spectrometer

Part Function
Sample Inlet Introduces the sample (solid, liquid, or gas)
Ion Source Converts molecules into ions (e.g., Electron Ionization)
Mass Analyzer Sorts ions by their mass-to-charge ratio
Detector Measures ion abundance and creates a signal
Vacuum System Maintains low pressure to allow ions to move freely

Ionization Methods

Method Description Use
Electron Ionization (EI) Electrons bombard the sample to knock out electrons Organic molecules
Electrospray Ionization (ESI) Produces ions by applying high voltage to liquid Biomolecules (proteins, peptides)
Matrix-Assisted Laser Desorption/Ionization (MALDI) Laser used to ionize large molecules Proteins, polymers
Chemical Ionization (CI) Uses reagent gas to ionize the sample Softer than EI

⚖️ Mass Analyzer Types

Analyzer How it Works Example Use
Quadrupole Filters ions using electric fields Routine analysis
Time of Flight (TOF) Measures time ions take to reach detector Fast & accurate
Ion Trap Traps ions and ejects by m/z Detailed fragmentation
Orbitrap Detects ions based on orbit frequency High resolution
Fourier-Transform Ion Cyclotron Resonance (FT-ICR) Very high resolution using magnetic fields Research-grade accuracy

📈 What is a Mass Spectrum?

A mass spectrum is a graph:

  • X-axis: mass-to-charge ratio (m/z)
  • Y-axis: relative abundance (intensity of signal)

Each peak represents a fragment or molecular ion.


🧩 Applications of Mass Spectrometry

  • 🔍 Pharmaceuticals: Drug purity and identification
  • 🧬 Proteomics: Protein sequencing
  • 🌿 Environmental: Detecting pollutants
  • 🧫 Clinical: Diagnosing diseases (e.g., cancer biomarkers)
  • 🧪 Chemistry: Molecular structure determination

🔄 Bonus: Tandem Mass Spectrometry (MS/MS)

Used to fragment ions further for detailed structural info.
Two analyzers are used in sequence to analyze parent and daughter ions.


📚 Key Terms to Remember

  • m/z: mass-to-charge ratio
  • Base Peak: tallest peak in spectrum
  • Molecular Ion (M⁺): peak representing intact molecule
  • Fragment Ion: pieces of the molecule after ionization

🧠 Summary Chart

Step Description
1. Ionization Molecule → Ion
2. Acceleration Ions are given energy
3. Separation Ions separated by m/z
4. Detection Ions detected & counted
5. Spectrum Output Data visualized for analysis


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